===> Building for opencarp-14.0 [ 0% 7/167] /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc FAILED: numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_vector.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:82:5: error: no matching function for call to 'VecGetSize' VecGetSize(data, &glb_size); ^~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::init' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:467:29: note: candidate function not viable: no known conversion from 'int *' to 'PetscInt *' (aka 'long *') for 2nd argument PETSC_EXTERN PetscErrorCode VecGetSize(Vec, PetscInt *); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:122:5: error: no matching function for call to 'VecSetValues' VecSetValues(data, idx.size(), idx.data(), vals.data(), mode); ^~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::set' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:360:29: note: candidate function not viable: no known conversion from 'const int *' to 'const PetscInt *' (aka 'const long *') for 3rd argument PETSC_EXTERN PetscErrorCode VecSetValues(Vec, PetscInt, const PetscInt[], const PetscScalar[], InsertMode); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:152:5: error: no matching function for call to 'VecGetValues' VecGetValues(data, iidx.size(), iidx.data(), iout.data()); ^~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::get' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:361:29: note: candidate function not viable: no known conversion from 'int *' to 'const PetscInt *' (aka 'const long *') for 3rd argument PETSC_EXTERN PetscErrorCode VecGetValues(Vec, PetscInt, const PetscInt[], PetscScalar[]); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:162:5: error: no matching function for call to 'VecGetValues' VecGetValues(data, iidx.size(), iidx.data(), iout.data()); ^~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::get' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:361:29: note: candidate function not viable: no known conversion from 'int *' to 'const PetscInt *' (aka 'const long *') for 3rd argument PETSC_EXTERN PetscErrorCode VecGetValues(Vec, PetscInt, const PetscInt[], PetscScalar[]); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:331:17: error: no matching function for call to 'VecGetLocalSize' T loc_size; VecGetLocalSize(data, &loc_size); ^~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::lsize' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:468:29: note: candidate function not viable: no known conversion from 'int *' to 'PetscInt *' (aka 'long *') for 2nd argument PETSC_EXTERN PetscErrorCode VecGetLocalSize(Vec, PetscInt *); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:337:17: error: no matching function for call to 'VecGetSize' T glb_size; VecGetSize(data, &glb_size); ^~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::gsize' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:467:29: note: candidate function not viable: no known conversion from 'int *' to 'PetscInt *' (aka 'long *') for 2nd argument PETSC_EXTERN PetscErrorCode VecGetSize(Vec, PetscInt *); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.h:343:5: error: no matching function for call to 'VecGetOwnershipRange' VecGetOwnershipRange(data, &start, &stop); ^~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_vector.cc:8:52: note: in instantiation of member function 'SF::petsc_vector::get_ownership_range' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_VECTOR); ^ /usr/local/include/petscvec.h:469:29: note: candidate function not viable: no known conversion from 'int *' to 'PetscInt *' (aka 'long *') for 2nd argument PETSC_EXTERN PetscErrorCode VecGetOwnershipRange(Vec, PetscInt *, PetscInt *); ^ 7 errors generated. [ 1% 7/167] cd /usr/ports/biology/opencarp/work/.build/physics/limpet && sh -c "/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/src/python/limpet_fe.py /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/models/DrouhardRoberge.model /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/models/imp_list.txt /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/src/imps_src" [ 1% 7/167] /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc FAILED: numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_solver.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc:4: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.h:53:7: error: no matching function for call to 'KSPGetIterationNumber' KSPGetIterationNumber(ksp, &(abstract_linear_solver::niter)); ^~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc:195:52: note: in instantiation of member function 'SF::petsc_solver::operator()' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_SOLVER); ^ /usr/local/include/petscksp.h:146:29: note: candidate function not viable: no known conversion from 'int *' to 'PetscInt *' (aka 'long *') for 2nd argument PETSC_EXTERN PetscErrorCode KSPGetIterationNumber(KSP, PetscInt *); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc:4: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.h:15: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:160:50: error: non-virtual member function marked 'override' hides virtual member function inline S get_value(T row_idx, T col_idx) const override ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc:144:21: note: in instantiation of template class 'SF::petsc_matrix' requested here auto &petsc_mat = dynamic_cast&>(mat); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_solver.cc:195:52: note: in instantiation of member function 'SF::petsc_solver::setup_solver' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_SOLVER); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:280:13: note: hidden overloaded virtual function 'SF::abstract_matrix::get_value' declared here: type mismatch at 1st parameter ('SF_int' (aka 'long') vs 'int') virtual S get_value(SF_int row_idx, SF_int col_idx) const = 0; ^ 2 errors generated. [ 2% 7/167] /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc FAILED: numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o -MF numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o.d -o numerics/CMakeFiles/numerics.dir/petsc/SF_petsc_matrix.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:160:50: error: non-virtual member function marked 'override' hides virtual member function inline S get_value(T row_idx, T col_idx) const override ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:10:52: note: in instantiation of template class 'SF::petsc_matrix' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_MATRIX); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:280:13: note: hidden overloaded virtual function 'SF::abstract_matrix::get_value' declared here: type mismatch at 1st parameter ('SF_int' (aka 'long') vs 'int') virtual S get_value(SF_int row_idx, SF_int col_idx) const = 0; ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:49:27: error: no matching member function for call to 'init' abstract_matrix::init(iNRows, iNCols, ilrows, ilcols, loc_offset, mxent); ~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:10:52: note: in instantiation of member function 'SF::petsc_matrix::init' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_MATRIX); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:86:23: note: candidate function not viable: no known conversion from 'SF::petsc_matrix' to 'SF::abstract_matrix' for object argument virtual inline void init(T iNRows, T iNCols, T ilrows, T ilcols, ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:105:15: note: candidate function not viable: requires 4 arguments, but 6 were provided inline void init(const meshdata & imesh, ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:64:27: error: no matching member function for call to 'init' abstract_matrix::init(imesh, irow_dpn, icol_dpn, max_edges); ~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:10:52: note: in instantiation of member function 'SF::petsc_matrix::init' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_MATRIX); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:105:15: note: candidate function not viable: no known conversion from 'SF::petsc_matrix' to 'SF::abstract_matrix' for object argument inline void init(const meshdata & imesh, ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_matrix.h:86:23: note: candidate function not viable: requires 6 arguments, but 4 were provided virtual inline void init(T iNRows, T iNCols, T ilrows, T ilcols, ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:141:5: error: no matching function for call to 'MatSetValues' MatSetValues(data, row_idx.size(), row_idx.data(), col_idx.size(), col_idx.data(), ^~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:10:52: note: in instantiation of member function 'SF::petsc_matrix::set_values' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_MATRIX); ^ /usr/local/include/petscmat.h:529:29: note: candidate function not viable: no known conversion from 'const int *' to 'const PetscInt *' (aka 'const long *') for 3rd argument PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:1: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.h:151:5: error: no matching function for call to 'MatSetValues' MatSetValues(data, row_idx.size(), row_idx.data(), col_idx.size(), col_idx.data(), ^~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:10:52: note: in instantiation of member function 'SF::petsc_matrix::set_values' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_PETSC_MATRIX); ^ /usr/local/include/petscmat.h:529:29: note: candidate function not viable: no known conversion from 'const int *' to 'const PetscInt *' (aka 'const long *') for 3rd argument PETSC_EXTERN PetscErrorCode MatSetValues(Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[], const PetscScalar[], InsertMode); ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:16:10: error: incompatible pointer types assigning to 'abstract_matrix *' from 'petsc_matrix *' *mat = new petsc_matrix(); ^~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc/SF_petsc_matrix.cc:21:52: note: in instantiation of function template specialization 'SF::init_matrix_petsc' requested here OPENCARP_INSTANTIATE_FOR_EACH_VALUE_AND_INDEX_TYPE(OPENCARP_DECLARE_INIT_MATRIX); ^ 6 errors generated. [ 2% 7/167] /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../physics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT fem/CMakeFiles/fem.dir/sf_interface.cc.o -MF fem/CMakeFiles/fem.dir/sf_interface.cc.o.d -o fem/CMakeFiles/fem.dir/sf_interface.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc FAILED: fem/CMakeFiles/fem.dir/sf_interface.cc.o /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../physics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT fem/CMakeFiles/fem.dir/sf_interface.cc.o -MF fem/CMakeFiles/fem.dir/sf_interface.cc.o.d -o fem/CMakeFiles/fem.dir/sf_interface.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1027:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1074:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1136:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:29: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../simulator/sim_utils.h:46: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/IGBheader.h:533:41: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] CONVERT_TYPE( long, LONG_MIN, LONG_MAX, buf ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/sys/limits.h:62:18: note: expanded from macro 'LONG_MAX' #define LONG_MAX __LONG_MAX /* max for a long */ ^~~~~~~~~~ /usr/include/x86/_limits.h:63:20: note: expanded from macro '__LONG_MAX' #define __LONG_MAX 0x7fffffffffffffff /* max for a long */ ^~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/IGBheader.h:509:66: note: expanded from macro 'CONVERT_TYPE' #define CONVERT_TYPE(D,m,M,B) { if(datumM)datum=M; \ ~^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/IGBheader.h:533:41: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] CONVERT_TYPE( long, LONG_MIN, LONG_MAX, buf ) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/sys/limits.h:62:18: note: expanded from macro 'LONG_MAX' #define LONG_MAX __LONG_MAX /* max for a long */ ^~~~~~~~~~ /usr/include/x86/_limits.h:63:20: note: expanded from macro '__LONG_MAX' #define __LONG_MAX 0x7fffffffffffffff /* max for a long */ ^~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/IGBheader.h:509:74: note: expanded from macro 'CONVERT_TYPE' #define CONVERT_TYPE(D,m,M,B) { if(datumM)datum=M; \ ~^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:72: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_vector.h:862:15: error: no viable overloaded '=' sc->idx_a = idx_a; ~~~~~~~~~ ^ ~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:104:37: note: in instantiation of member function 'SF::scatter_registry::register_scattering' requested here ret = user_globals::scatter_reg.register_scattering(spec, from_mesh.pl.algebraic_layout(), ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:85:15: note: candidate function not viable: no known conversion from 'const vector' to 'const vector' for 1st argument inline void operator= (const vector & vec) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:72: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_abstract_vector.h:863:15: error: no viable overloaded '=' sc->idx_b = idx_b; ~~~~~~~~~ ^ ~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:85:15: note: candidate function not viable: no known conversion from 'const vector' to 'const vector' for 1st argument inline void operator= (const vector & vec) ^ 2 warnings and 5 errors generated. [ 3% 7/167] /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../physics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT fem/CMakeFiles/fem.dir/fem_utils.cc.o -MF fem/CMakeFiles/fem.dir/fem_utils.cc.o.d -o fem/CMakeFiles/fem.dir/fem_utils.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem_utils.cc FAILED: fem/CMakeFiles/fem.dir/fem_utils.cc.o /usr/local/libexec/ccache/c++ -DHAVE_DLOPEN -DWITH_PETSC -D_GNU_SOURCE -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../physics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/../simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/ginkgo -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/numerics/petsc -I/usr/ports/biology/opencarp/work/.build/simulator -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/param/include -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem -I/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/json-c -I/usr/local/include/gcc13 -I/usr/local/include -DNDEBUG -std=gnu++14 -MD -MT fem/CMakeFiles/fem.dir/fem_utils.cc.o -MF fem/CMakeFiles/fem.dir/fem_utils.cc.o.d -o fem/CMakeFiles/fem.dir/fem_utils.cc.o -c /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem_utils.cc In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem_utils.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem.h:31: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1027:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem_utils.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem.h:31: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1074:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem_utils.cc:28: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/fem.h:31: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/sf_interface.h:42: In file included from /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_base.h:83: /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_fem_utils.h:1136:26: error: no viable conversion from 'vector' to 'const vector' const vector & petsc_nbr = domain.get_numbering(NBR_PETSC); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:50:3: note: candidate constructor not viable: no known conversion from 'vector' to 'size_t' (aka 'unsigned long') for 1st argument vector(size_t n): _data(NULL), _capacity(0), _size(0) ^ /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/fem/slimfem/src/SF_vector.h:62:3: note: candidate constructor not viable: no known conversion from 'vector' to 'const vector &' for 1st argument vector(const vector &vec): _data(NULL), _capacity(0), _size(0) ^ 3 errors generated. [ 4% 7/167] cd /usr/ports/biology/opencarp/work/.build/physics/limpet && sh -c "/usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/src/python/limpet_fe.py /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/models/DiFrancescoNoble.model /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/models/imp_list.txt /usr/ports/biology/opencarp/work/openCARP-a92e564a422c7ccf2ac1e84bc5a8267b39307bf9/physics/limpet/src/imps_src" ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/opencarp